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Frontiers in Veterinary Science

○ Frontiers Media SA

Preprints posted in the last 90 days, ranked by how well they match Frontiers in Veterinary Science's content profile, based on 32 papers previously published here. The average preprint has a 0.03% match score for this journal, so anything above that is already an above-average fit.

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Knowledge, Attitudes and Practices (KAP) of Cat Owners Towards Flea Infestation and Flea-Borne Diseases (FBDs) in Selected Regions of Bangladesh

Rabbi, M. R. R.; Miti, A. A.; Safowan, M.; Mukti, Z. F.; Hossain, M. S.; Riad, M.; Azad, M. A. K.; Tonmoy, M. J. R.; Pramanik, N.; Al-Noman, K. M.

2026-08-04 scientific communication and education 10.64898/2026.08.01.742186 medRxiv
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Background: Flea infestation is an important companion-animal health problem and a prime source of zoonotic exposure. However, information on cat owners awareness and preventive behavior regarding fleas and flea-borne diseases (FBDs) in Bangladesh is limited. This study assessed the knowledge, attitudes and practices (KAP) of cat owners regarding flea infestation and flea-borne diseases in selected areas of central Bangladesh. Methods: A cross-sectional survey was conducted from November 2025 to July 2026 among 238 cat owners attending veterinary clinics in Savar, Dhamrai and Manikganj Upazila. Data were collected using a pretested structured questionnaire covering respondent characteristics, flea biology and transmission, perceived risks, and flea-prevention and control practices. Descriptive statistics were used to summarize the findings, and respondents were classified according to their overall KAP scores. Results: Of the respondents, 47.1% owned cats with outdoor access and 77.7% reported that their pets had previously experienced flea infestation. Although 65.5% used flea-control treatments, awareness of zoonotic and disease-transmission risks was limited. Only 14.7% recognized that fleas can parasitize humans, while 17.6% knew that fleas can transmit infectious agents. Overall, 83.2% of respondents had poor knowledge, whereas 69.7% demonstrated moderate attitudes and 63.9% showed moderate practices. Good knowledge and good practice were uncommon, accounting for only 3.8% and 4.6% of respondents, respectively. Veterinary recommendation was the most frequently reported motivation for using flea-control products. Conclusions: Cat owners attending in the surveyed areas frequently reported flea exposure and treatment use, but substantial gaps remained in their understanding of flea biology, zoonotic potential and comprehensive control. Targeted veterinary education emphasizing routine prevention, treatment of all susceptible household animals and environmental management is needed. These findings provide regional baseline evidence and should not be interpreted as nationally representative. Keywords: Bangladesh; cat owners; ectoparasites; flea-borne diseases; flea control; knowledge, attitudes and practices; One Health.

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Landscape-mediated spread dynamics and anticipatory surveillance of African swine fever in wild boar: insights from the 2025-2026 Catalonia utbreak in Spain

Bosch, J.; Ivorra, B.; Aguilar-Vega, C.; Ito, S.; Sanchez Vizcaino, J. M.; Ramos, A. M.

2026-07-27 scientific communication and education 10.64898/2026.07.03.736421 medRxiv
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African swine fever (ASF) in wild boar poses major surveillance and control challenges, particularly in periurban and human-modified landscapes where ecological complexity, delayed detection, and heterogeneous host movements complicate out-break interpretation. In late 2025, ASF was detected in wild boar in Catalonia, Spain, creating a high-priority epidemiological scenario at the wildlife-urban interface. In this study, we analysed the 2025-2026 Catalonia outbreak using scenario-based spatial modelling with the WIMBOARD (Wild Integrated Movement Boar Outbreak and Risk Dynamics) framework. Simulations under baseline control conditions were used to interpret spread dynamics and support anticipatory surveillance. The results indicate that outbreak expansion was structured and directional rather than isotropic. Temporal outputs suggested delayed detectability between infection prevalence and mortality signals, whereas cumulative spatial risk maps, time-to-infection surfaces, and monthly infection-risk dynamics identified directional asymmetries and differentiated phases of spread. An early southward dispersal signal was consistent with initial field observations, while the north-northwest sector emerged as the most consequential expansion scenario because of its stronger functional connectivity and higher potential for regional amplification and persistence, while a later northeast-ward phase remained comparatively less influential within the 500-day simulation horizon. Monthly risk surfaces further showed that ASF spread behaved as a moving eco-epidemiological wavefront, allowing identification of shifting surveillance windows before mortality became apparent. These findings support the interpretation of the Catalonia outbreak as a landscape-mediated epidemiological process shaped by functional connectivity, wildlife behavioural adaptation, peri-urban ecological structure, and delayed detection. This study shows how spatially explicit eco-epidemiological modelling can support outbreak interpretation, surveillance prioritisation, and proactive wildlife disease management under complex field conditions.

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Whole-genome resequencing-based comparative variant analysis identifies candidate genes associated with cross-beak phenotype in Huiyang Bearded chickens

Ye, F.; Yu, H.; Hong, Y.; Zhao, H.; Kang, H.; Yu, H.; Li, H.

2026-08-18 genomics 10.64898/2026.08.11.744104 medRxiv
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Cross-beaks are deemed a threat to poultry health, productivity, and animal welfare. Nevertheless, due to sporadic cases, heterogeneity of gene loci and incomplete dominance, the molecular mechanism of cross-beak formation, especially the degree of cross, is not yet clear. Thus, we screen key genes and reveal the possible phenotypic formation mechanism of cross-beak by comparison with different degrees of deformity in Huiyang Bearded chickens by compare whole-genome resequencing-based variant analysis. Comparative analysis between cross-beak and normal-beaked chickens identified differential variants in several candidate genes, including CDH11, CTNNAL1, NRXN3, NRXN1, CDH5, SDC3, and DHFR. Genes harboring these variants were enriched in pathways related to cell adhesion molecules and metabolic processes, with functional annotations involving cell-cell adhesion and neural crest cell migration. Comparative analysis between chickens with severe and slight cross-beak deformities identified additional candidate genes, including MRPL21, NSUN2, DDX55, GNB3, and NFKB2. These genes were associated with enriched terms and pathways related to focal adhesion, amyotrophic lateral sclerosis, steroid 7 -hydroxylase activity, and skin-barrier establishment. These findings provide a preliminary catalogue of genetic variants and candidate genes for future functional studies of cross-beak development and severity in chickens.

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Sex-Specific Modulation of Gene Expression by 17beta-Estradiol in Human Meniscal Cells: Pathways to Targeted Osteoarthritis Therapies

Yu, Y.; Vergis, J.; Eby, H.; Markho, M.; Kopacz, J.; Cartwright, K.; Hershey, M.; Liu, J.; McCullumsmith, R.

2026-07-28 bioinformatics 10.64898/2026.07.24.740612 medRxiv
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Osteoarthritis (OA) disproportionately affects women, and estrogen has been implicated in cartilage and joint homeostasis, yet its effects on meniscal fibrochondrocytes (MFCs), and whether those effects differ by sex, remain poorly defined. We reanalyzed a publicly available RNA-sequencing dataset (Gene Expression Omnibus, GSE199087) comprising human MFCs from a male and a female donor treated with 17{beta}-estradiol (E2) or vehicle. Differential expression, Gene Set Enrichment Analysis, Enrichr, and iLINCS were integrated to identify the transcriptional programs modulated by E2 in each sex. In female MFCs, E2 upregulated pathways governing DNA replication, cell-cycle progression, and genomic maintenance (e.g., MCM8, BRCA1, RAD51), while downregulating inflammatory and extracellular matrix-degrading genes, including MMP1, IL12A, CXCL12, and MYD88. In male MFCs, E2 instead upregulated chromatin remodeling and developmental signaling programs, led by SRCAP, ERCC6, and NOTCH1, and downregulated antigen presentation and mitochondrial genes. These divergent responses indicate that E2 engages distinct, sex-specific transcriptional programs in MFCs, with the female profile favoring proliferation and matrix preservation. Although derived from a limited sample and therefore hypothesis-generating, these findings nominate candidate mechanisms underlying sex differences in meniscal biology and OA susceptibility, and warrant validation in larger, sex-balanced cohorts. Graphical Abstract O_FIG O_LINKSMALLFIG WIDTH=200 HEIGHT=200 SRC="FIGDIR/small/740612v1_ufig1.gif" ALT="Figure 1"> View larger version (33K): org.highwire.dtl.DTLVardef@16026fforg.highwire.dtl.DTLVardef@1a048acorg.highwire.dtl.DTLVardef@3246corg.highwire.dtl.DTLVardef@4c598b_HPS_FORMAT_FIGEXP M_FIG C_FIG

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Transcriptome analysis reveals CCND2 promotes myogenic differentiation of pig skeletal muscle

Li, J.; Zhang, J.; Song, Q.; Li, S.; Zeng, Y.; Chen, W.

2026-09-22 genomics 10.64898/2026.09.16.752030 medRxiv
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ABSTRACT Objective: Skeletal muscle growth rate differs substantially among diverse pig breeds. In the present study, RNA-seq was performed to identify differentially expressed genes (DEGs) across pig breeds with distinct growth rates. CCND2 showed obvious differential expression among pig breeds. Although CCND2 is essential for cell cycle control, its biological function in skeletal muscle differentiation has rarely been reported. This work aims to identify DEGs in pig breeds with different growth rates and explore CCND2 role in porcine skeletal muscle development. Methods: RNA-seq was performed to identify differentially expressed genes (DEGs) across pig breeds with distinct growth rates. Weighted gene co-expression network analysis (WGCNA) was used to identify gene modules potentially associated with skeletal muscle growth and development. Quantitative reverse transcription polymerase chain reaction (qRT-PCR) analysis was performed to validate the role of CCND2 in skeletal muscle differentiation. Results We identified 5,416, 4,846, and 2,777 DEGs in the Duroc pig (DU) vs. Jiangquan black pig (JQ), DU vs. Laiwu pigs (LW), and JQ vs. LW comparison groups, respectively. WGCNA identified two gene modules (lightgreen and darkmagenta) potentially associated with skeletal muscle growth and development. CCND2 exhibited differential expression in comparisons between DU vs JQ and DU vs LW, with higher expression observed in Duroc pigs. qRT-PCR analysis revealed that overexpression of CCND2 at day 6 (D6) of cell differentiation significantly increased the expression levels of CCND2 gene and markers of myogenic differentiation (p < 0.05). Conversely, knockdown of CCND2 significantly decreased the expression levels of CCND2 gene and myogenic differentiation markers (p < 0.05). Conclusions This study identified breed-specific DEGs and key gene modules in porcine skeletal muscle and verified that CCND2 promotes myogenic differentiation. These findings provide a genetic theoretical basis for further investigations into skeletal muscle growth and development. Keywords pig, skeletal muscle, transcriptome, WGCNA, CCND2

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HPAI H5N1 risk in Australia: a model for the prediction of poultry outbreaks

Zhang, P.; Lim, S.; Quigley, A.; MacIntyre, C. R.

2026-07-28 bioinformatics 10.64898/2026.07.27.740638 medRxiv
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The panzootic highly pathogenic avian influenza (HPAI) H5N1 virus has now been detected on the Australian mainland, with incursions from the sub-Antarctic region posing an increasing threat to domestic wildlife and poultry populations. Our study aimed to predict the risk of HPAI H5N1 poultry outbreaks across Australia at the local government area (LGA) level using a range of influential risk factors. We first used a Maximum Entropy (MaxEnt) model to estimate the environmental suitability for HPAI H5N1 occurrence across Australia. The resulting suitability layer was then integrated with five additional predictor layers, including abundance data for two Southern Ocean wild birds, one of which has introduced HPAI H5N1 into Australia; abundance data for 28 native Australian wild birds; native bird flyways across Australia; Australian chicken density; and poultry farm density. The six layers were aggregated and averaged to generate an HPAI H5N1 risk map for poultry outbreaks across Australian LGAs. Although most incursions have occurred in Western Australia (WA) and South Australia (SA), we identified New South Wales (NSW) and Victoria (VIC) as having the highest predicted risk of HPAI H5N1 poultry outbreaks. Additional high-risk areas were identified in WA, SA, and Tasmania (TAS). In contrast, the Northern Territory (NT) and large parts of Queensland (QLD), WA, and SA were predicted to be at low risk. These findings provide a spatially explicit framework to support targeted surveillance, preparedness, and biosecurity measures aimed at mitigating the impact of future HPAI H5N1 outbreaks in Australian poultry.

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Cross-species Study of Canine and Human Peripheral Nerve Sheath Tumors: Clinical and Molecular Perspectives

Landry, J. P.; Bhalla, A. D.; Landers, S. M.; Lazcano, R.; Parker, L. A.; Miller, T. M.; Niemi, N.; Lyu, H.; Lillemoe, H.; Keung, E. Z.; Scally, C. P.; Roland, C. L.; Hunt, K. K.; Slopis, J. M.; McCutcheon, I. E.; Boudreau, B.; Wilson-Robles, H.; Lazar, A. J.; Rai, K.; Wiener, D. J.; Davis, B. W.; Wustefeld-Janssens, B.; Torres, K. E.

2026-07-29 cancer biology 10.64898/2026.07.28.740600 medRxiv
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Malignant peripheral nerve sheath tumors (MPNSTs) are aggressive sarcomas. An obstacle to treating MPNSTs is a lack of effective systemic therapies. Although over 70% of human MPNSTs have lost or inactivated the epigenome regulator polycomb repressive complex 2 (PRC2), its activity and contribution to canine PNST progression remain unclear. This study compared canine peripheral nerve sheath tumors (PNSTs) and human MPNSTs across biological and clinical features, including PRC2 activity. Immunohistochemical analysis was performed for a human tissue microarray of 54 neurofibromas and 139 MPNSTs, and 63 canine PNSTs for H3K27me3, a repressive histone mark deposited by intact PRC2, and H3K27ac, which increases globally upon H3K27me3 loss. To understand the genomic alterations present in canine PNSTs, we analyzed tumor mutation burden, copy number alteration, and transcriptomes of eight canine PNST/normal pairs. The results suggested that H3K27me3 loss and associated gain of H3K27ac epigenetically drive human and canine tumors. These findings warrant further studies to evaluate whether these epigenetic deregulations alter similar gene signatures across species.

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A frameshift mutation in PRICKLE1 causes skeletal dysplasia in Cheviot sheep

Matika, O.; Davey, M. G.; del Pozo, J.; Finlayson, H. A.; Farquharson, C.; Headon, D. J.; Kijas, J. W.; McTeir, L.; Bathos-Samblas, C.; Watson, E.; Riggio, V.; Schoenebeck, J. J.; Schwarz, T.; Staines, K. A.; Pong-Wong, R.; Lu, Z. H.; Bishop, S. C.; Woolliams, J. A.; Archibald, A. L.

2026-10-09 genetics 10.64898/2026.10.07.757262 medRxiv
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Skeletal dysplasias can occur in animals, including humans, and are attributed to both environmental and genetic causes. As our understanding of the distinguishing phenotypes of different skeletal dysplasias improves, alongside elucidation of the mechanisms and genetic networks that contribute to skeletal development, identifying and controlling genetic mutations in livestock populations has become increasingly possible, including approaches beyond selective breeding alone. Within Scotland an 'achondroplasia' syndrome that was first described in the South Country Cheviot breed of sheep (OMIA 000004-9940), has continued to occur periodically within the same geographical locations, despite culling of affected lambs over many decades. Affected lambs exhibit rounded heads, short legs, a loss of hooves, abnormal stance and short twisted tails. As the condition has been observed in flocks and as progeny from specific ram and ewe matings, and cases have been co-twinned to normal siblings, this suggests a syndrome caused by a recessive genetic condition rather than environmental factors. Through homozygosity mapping and whole genome sequence analyses, we identified a 10 bp deletion in the open reading frame of the PRICKLE1 gene that encodes prickle planar cell polarity protein 1 and is essential for normal vertebrate embryonic development. We identified additional phenotypes present in affected lambs, including a loss of phalanges, neural tube defects, vertebral and articular chondrocyte defects, hair orientation differences and polycystic kidneys, consistent with a loss of PRICKLE1 function based on comparisons to mouse mutant lines. These findings enabled the development of a simple DNA test for the identified PRICKLE1 mutation that was made commercially available to facilitate the elimination of this genetic disease from sheep flocks.

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Primary tumor transcriptomic signature is associated with locoregional dissemination in canine mammary carcinoma

Park, J.-H.; Choi, J.-Y.; Kim, S.-H.; Song, K.-H.; Kim, S.-K.; Seo, K.-W.

2026-09-15 cancer biology 10.64898/2026.09.10.750581 medRxiv
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Canine mammary carcinoma (CMC) exhibits heterogeneous metastatic behavior, while accurate assessment of locoregional dissemination may be limited by incomplete sampling, occult metastasis, and variable sentinel lymph node anatomy. We investigated whether primary-tumor transcriptomic programs are associated with locoregional dissemination. The training cohort comprised 113 CMC RNA sequencing samples classified by peritumoral lymphatic vessel invasion, and the independent evaluation cohort comprised 27 microarray samples classified by histopathologically confirmed lymph node (LN) metastasis. Expression profiles were mapped to human ortholog gene symbols, and single-sample gene set enrichment analysis (ssGSEA) was performed using Molecular Signatures Database (MSigDB) gene sets. Seven candidate gene sets selected through univariable screening and literature-guided curation were entered into least absolute shrinkage and selection operator (LASSO) logistic regression, yielding a four-gene-set transcriptomic risk score (RS). The RS showed an apparent receiver operating characteristic area under the curve (ROC-AUC) of 0.949 (95% confidence interval, 0.906-0.993) and precision-recall area under the curve (PR-AUC) of 0.725 in the training cohort; bootstrap internal validation yielded an optimism-corrected ROC-AUC of 0.920. In the evaluation cohort, the ROC-AUC was 0.890 (95% confidence interval, 0.766-1.000) and PR-AUC was 0.869. Discrimination was attenuated but retained in histologically restricted sensitivity analyses, and higher RS remained associated with locoregional dissemination after clinicopathologic adjustment. These findings support gene-set-level transcriptomic scoring as a potential complementary approach for characterizing dissemination-associated primary-tumor states in CMC.

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Estimation of the transmission dynamics of H5N1 HPAI outbreak in a dairy herd using a modeling approach

Kulkarni, P. S.; Aly, S. S.; Williams, D. R. R.; ElAshmawy, W. R.; Pandit, P. S.

2026-09-23 systems biology 10.64898/2026.09.22.753543 medRxiv
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The emergence of Highly Pathogenic Avian Influenza (HPAI 2.3.4.4b) in dairy herds in 2024 across 19 states in the United States of America has raised concerns regarding the potential national and global zoonotic impact. All recent modeling efforts implemented homogenous cattle-to-cattle (both intra and inter-herd) transmission models which did not capture the real-world heterogeneity in mixing of animals, individual variations in susceptibility and infectiousness and clinical incidences across pens and lactation groups. The aim of this study was to develop a heterogenous transmission model to estimate the epidemiological parameters for intra-herd HPAI transmission on Californian dairies. We developed a validated stochastic agent-based model to estimate the epidemiological parameters for intra-herd HPAI transmission on California dairies. The hierarchical agent-based model also parameterized stochastic cattle movements within-herd to simulate real dairy management practices. A cow-level SEIR transmission approach was assumed during the outbreak. A novel Bayesian Optimizer with Gaussian Process (BO-GP) was fitted to the agent-based model for validation which converged within 25-40 iterations (out of 100 per farm) with minimal loss over two distinct error metrics, namely, Poisson loss function and temporal distance metric. Our optimized simulations estimated an average R0 was around 10.7-10.8 across all farms within the first 15 days of observed outbreak on four dairy farms with a mean effective transmission rate of 4.5% per contact between susceptible and infectious cows within each pen. Our model demonstrated that the movement of cows between pens ensured localized clusters of outbreaks within the sub-herds (pen population) that prolonged the overall outbreak within farms. We estimated the total duration of infection between 14.5 and 28 days, which is higher than the estimates from the homogenous models. With an integrated hierarchical agent-based model combined with Bayesian approximation, we produced actionable insights on the epidemiology of intra-farm spread of HPAI within cow herds, thereby guiding both future model development and applied disease control strategy.

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Beyond compliance: evaluating the impact of assent-based training on equine behavior and the human-horse relationship.

Tanghetti, E.; Range, F.; Folkertsma, R.

2026-09-18 animal behavior and cognition 10.64898/2026.09.12.751177 medRxiv
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Recent advances in animal training increasingly emphasize welfare, positive experience and the reduction of stress. In the equine sector, however, such progress is complicated by the horse s dual role as both companion and performance animal. This study investigated whether an assent based training approach (ABT) has an effect on horse behavior and human-horse interaction quality compared to traditional equine training (TET) based on pressure and release. Two groups of horse-owner pairs (ABT and TET) participated in two behavioral tests. A stroking session evaluated horses' responses to human tactile interaction, while an obstacle path assessed horses' exploration of novel objects and refusal behaviors. Behavioral measures of exploration, avoidance, and owner-directed behaviors were analyzed alongside horse personality traits. A newly validated questionnaire was used to gather demography information, training habits and horse personality traits. During the stroking session, ABT horses displayed more positive human-directed behaviors, reflecting active engagement rather than passive tolerance. Sociability was associated with the overall frequency of human-directed behaviors, but did not predict their positive valence, which was instead linked to ABT training style. Horses trained mainly with ABT explored obstacles more and showed fewer refusal behaviors than traditionally trained horses, independently of anxiety traits derived from personality scores. These findings suggest that assent-based training practices are associated with increased confidence and cooperative engagement in horses, supporting the potential of agency oriented approaches to enhance both equine welfare and human-horse interaction quality.

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Automated Detection of Livestock Gastrointestinal Parasite Eggs and Cysts Using YOLOv8-Based Deep Learning

Sarwer, A.

2026-08-26 bioinformatics 10.64898/2026.08.21.746375 medRxiv
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Parasitic infection is one of the common health problems of livestock in Bangladesh. Due to the country's climate, heavy monsoon rainfall, low biosecurity in farms, and high humidity, along with presence of suitable vector organisms, gastrointestinal parasitism remains widespread in cattle and other livestock. The standard method of diagnosis is microscopic examination of fecal samples, but this depends on manual observation, which is time-consuming and can lead to human error, mainly because many parasite eggs look similar to each other and samples often contain contaminants that can be mistaken for eggs or cysts. In this study, we tried to apply the YOLOv8 deep learning model for automated detection of parasitic eggs and cysts from microscopic images of livestock fecal samples. Images of clinical cases were collected, annotated, and used to train the model in Python, with batch size 16, auto optimizer, learning rate 0.01, momentum 0.937 and weight decay 0.0005. Training was done using Google Colab, and the model was evaluated using precision, recall, F1-score, mAP50, and mAP50-95. The model achieved a precision of 56%, recall of 24%, F1-score of 33.6%, mAP50 of 33%, and mAP50-95 of 22%. The relatively low recall and F1-score indicate that the model still has considerable limitations, largely due to insufficient species-specific training data and presence of image artifacts. Underrepresentation of some parasite species, such as Trichuris spp., in the dataset also caused class imbalance, which affected the model's ability to detect these species reliably. Despite these limitations, the study indicates that YOLOv8 architecture has some potential to be used for detection of parasitic eggs and cysts from microscopic images, and that further work with larger and more balanced datasets may improve performance and applicability in veterinary diagnostics. Keywords: YOLOv8, livestock parasites, deep learning, microscopic image analysis, veterinary diagnostics, Bangladesh

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Evaluating home-cage-activity metrics for detecting postprocedural pain in a plantar incision mouse model

Malmberg, M. E.; Bertelsen, T.; Bollen, P.; Abelson, K.; Hestehave, S.; Kalliokoski, O.

2026-09-25 animal behavior and cognition 10.64898/2026.09.23.753854 medRxiv
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Detection of postoperative pain in mice is challenging, and there is a need for unbiased, automated methods. Home-cage monitoring systems are promising, but their ability to detect mild pain remains unclear. We evaluated whether home-cage activity measures can be used to detect pain-related changes in a plantar incision model of postoperative pain. First, we confirmed the presence of local hypersensitivity using von Frey filaments on 48 C57BL/6JRj mice (24 males, 24 females). Subsequently, we pair-housed 64 mice (32 males, 32 females) and allocated them to receive either a 4 mm plantar incision on the hind paw under anaesthesia, or anaesthesia alone. Baseline locomotion and voluntary wheel-running activity were recorded over five days, followed by four days of postprocedural monitoring in the home cages. Both procedure groups (incision and anaesthesia-only) showed reduced locomotion and running wheel activity relative to baseline. However, activity measures did not differ between incised and anaesthesia-only mice, and we detected no sex-related effects. Under these conditions, home cage activity measures did not reliably discriminate pain-related behavioural changes in the model, despite the model showing local mechanical hypersensitivity in the von Frey test. Together, these findings indicate that, given the mild and localised nature of the plantar incision mouse model, commonly used home-cage metrics cannot yet reliably detect subtle pain-related behavioural changes.

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Transcriptomic profile of a rat jaw opener (anterior digastric) and a jaw closer (superficial masseter).

Meemaduma, P. S.; Reder, B. P.; Konow, N.; Moore, J. R.; Gage, M. J.

2026-09-02 bioinformatics 10.64898/2026.08.28.747950 medRxiv
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Mammalian skeletal muscle research predominantly focuses on locomotor muscles, and feeding related muscles remain less extensively characterized despite their role in mastication, mandibular stabilization, and swallowing. In this study, we investigated the transcriptomic specialization of three functionally and developmentally unique rat muscles: the anterior digastric (AD), a jaw opening muscle; the superficial masseter (SM), a jaw closing muscle; and the Sternohyoid (SH), a non-mandibular muscle involved in swallowing. Differential gene expression and weighted gene co-expression network analysis were used to characterize the transcription level features associated with their distinct roles. Our results indicated that all three muscles predominantly expressed fast-twitch contractile isoforms. However, the AD showed lower overall expression of several contractile gene families, including myosin heavy chain, myosin light chain, and tropomyosin isoforms, while exhibiting elevated expression of slow/oxidative myosin isoforms like Myh7 and Myh2. Network analysis revealed that modules correlated with AD are strongly enriched for fatty acid catabolism, mitochondrial energy production, and vascular/extracellular matrix remodeling. Additionally, AD and SM shared a distinct gene set compared to SH, highlighting their common developmental origin from the first branchial arch. Our findings show that the rat feeding related muscles possess unique transcriptomic profiles shaped by their contractile functions, developmental origins, and metabolic functions.

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In vitro antimicrobial resistance in clinical isolates of bacterial pathogens causing bovine respiratory disease: a systematic review and meta-analysis

Mahmood, Q.; Rasmussen, P.; Damborg, P. P.; Hansen, K. B.; Gregersen, C. B.; Scahill, K. A.; Carmo, L. P.; Firth, C. L.; Pardon, B.; Stokstad, M.; Anestad, L. M.; Guardabassi, L.; Conrady, B.

2026-09-29 microbiology 10.64898/2026.09.28.754992 medRxiv
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Background: Bovine respiratory disease (BRD) is a major cause of antimicrobial use in cattle, raising concerns about antimicrobial resistance (AMR). This systematic review estimated pooled AMR proportions in BRD pathogens: Mannheimia haemolytica, Pasteurella multocida, and Histophilus somni, and assessed temporal and geographic trends in resistance. Methods: Five antimicrobials commonly used for BRD treatment were evaluated: penicillin G (PEN), tetracycline (TET), florfenicol (FLO), tulathromycin (TUL), and enrofloxacin (ENR). Following PRISMA guidelines, 1,097 records were screened and 24 studies met inclusion criteria. Study quality and risk of bias were assessed, and random-effects meta-analyses estimated pooled proportions of resistant isolates by antimicrobial, continent and period. Results: A total of 13,949 bacterial isolates were analysed including P. multocida (5,615), M. haemolytica (5,585), and H. somni (2,749). TET resistance was highest across all pathogens (12-30%), followed by TUL (6-11%), PEN (4-12%), FLO (0.5-1.6%) and ENR (0.2-1.1%). TET resistance in M. haemolytica and P. multocida, and FLO resistance in P. multocida were significantly more frequent in North America than in Europe (p[&le;]0.05). TUL resistance increased significantly in P. multocida after 2013 (p=0.038), with similar non significant trends in M. haemolytica and H. somni. FLO resistance decreased significantly in H. somni after 2013 (p=0.013). Egger's test identified significant funnel plot asymmetry for ENR resistance in H. somni and PEN resistance in M. haemolytica, suggesting possible small study effects. Conclusion: These results offer insights into distribution of phenotypic resistance across pathogens and regions, informing BRD antimicrobial treatment guidelines and One-Health antimicrobial stewardship aimed at preserving the effectiveness of medically important antimicrobials.

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Reanalysis of data from ten years of koala chlamydia vaccine trials reveals inherent bias and a lack of protective efficacy

Chappell, K. J.; Blyton, M. D. J.

2026-09-07 immunology 10.64898/2026.09.02.748764 medRxiv
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Koalas within Australia are facing multiple threats from habitat loss, climate change and pervasive chlamydial disease. A safe and effective vaccine to protect koalas against chlamydia would be a welcome veterinary intervention to prevent this devastating disease which causes blindness, renal and reproductive pathology, infertility and mortality. However, over a decade of vaccine development and research trials has produced conflicting results, which vary from no observable indication of protective efficacy to a 64% reduction in chlamydia associated mortality. Given this discrepancy we conducted an independent analysis of data underpinning the highly cited publication demonstrating vaccine efficacy that was the basis for a permit for limited use in koalas. In doing so, we identified a substantial error in the way the data was encoded for analysis, which resulted in survival from birth to time of vaccination incorrectly being attributed to vaccination. After correction for this error, we show using the exact methods of the original authors that there was no significant difference in the survival or disease rate between vaccinated and unvaccinated koalas. Furthermore, we identified a substantial source of bias whereby animals with disease at their first health assessment were not excluded from the study and as those animals were generally not vaccinated, they were almost six times more likely to be included in the control group. Reanalysis including only koalas that were healthy on initial assessment and for which follow-up health assessments were performed, showed that vaccinated individuals were equally likely to contract disease or to die with disease; 18 of 143 vaccinated koalas (12.6%) developed disease and 3 (2.1%) died, compared to 63 of 439 control animals (14.4%) that developed disease and 11 (2.5%) that died. This study highlights the importance of randomised, observer blinded, placebo-controlled studies in veterinary settings to uphold scientific rigor and prevent stratification bias.

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Repeated intermittent clenbuterol administration induces exposure history-dependent proteomic remodeling in mouse skeletal muscle

Hitachi, K.; Yamaguchi, H.; Kiyofuji, Y.; Tsuchida, K.

2026-07-24 molecular biology 10.64898/2026.07.24.740506 medRxiv
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Clenbuterol (CB), a {beta}2-adrenergic receptor agonist, is known to increase skeletal muscle mass. However, because its effects are influenced by treatment duration, dose, and {beta}-adrenergic receptor responsiveness, it remains unclear how extended intermittent CB exposure alters the skeletal muscle proteome. In this study, we established a repeated intermittent CB administration model in mice and compared the effects of single and repeated CB exposure on plantaris muscle using label-free quantitative proteomics. Repeated CB exposure produced a more evident muscle-weight response than single exposure under the same long-term experimental timeline. Proteomic profiling revealed that repeated CB exposure was not a simple reproduction or amplification of the single CB response, but was associated with distinct changes in sarcomere-associated, tissue-remodeling-related, membrane-trafficking-related, and metabolic proteins. Integrated response-class analysis further identified multiple patterns of protein regulation, including shared CB-responsive proteins and proteins preferentially identified as changed under repeated CB conditions. Immunoblotting validated representative proteins from these response classes: Klhl40 and Napa as shared CB-responsive proteins, Galectin-3 as a strongly CB-responsive remodeling-related protein, and Rab18 as a protein change more clearly detected under repeated CB conditions. Together, these findings indicate that repeated intermittent CB exposure induces exposure history-dependent proteomic remodeling in skeletal muscle. This study provides a resource for understanding the molecular consequences of repeated CB exposure and for future mechanistic studies of {beta}2-adrenergic stimulation-induced skeletal muscle adaptation.

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Demographic turnover undermines herd immunity in sympatric free-roaming dogs and cats: implications for zoonotic disease control in urban sentinel sites

Norris, D.; Michalski, F.

2026-07-29 ecology 10.64898/2026.07.28.741324 medRxiv
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Vaccination of free-roaming dogs (Canis lupus familiaris) and cats (Felis catus) remains a major public health challenge. Rapid urbanization forces these species into complex contact zones, where structural failure of pulsed vaccination under high demographic turnover undermines standard One Health interventions. In such cases species-specific intervention cycles are needed to reduce zoonotic disease risk. We integrated field-data within a simulated vaccination campaign to determine how species-specific turnover rates drive the erosion of herd immunity at an Amazonian urban sentinel site (university campus). We monitored free-roaming populations (72 dogs, 75 cats) using a non-invasive photographic mark-resight protocol from 2023 to 2025. We modelled time-to-disappearance using Cox Proportional Hazards and simulated the trajectory of effective vaccination coverage against a 40% herd immunity threshold, distinguishing between loss of vaccinated individuals and recruitment of susceptible individuals. The campus functioned as a high-turnover system, with 72% of dogs and 48% of cats classified as transients. Species significantly predicted persistence (Hazard Ratio = 0.56; 95% CI: 0.33-0.94; p=0.029), with cats exhibiting double the median residency of dogs (432 vs. 193 days). Consequently, the species experienced divergent epidemiological failure modes. For dogs, simulated vaccination coverage collapsed below a 40% herd immunity threshold in 160 days, driven by rapid immunity attrition (the loss of vaccinated individuals). Although cats persisted longer, their effective coverage was eroded by immunity dilution due to recruitment of naive juveniles, creating a 33% gap between cohort survival and population-level immunity by day 365. Annual vaccination campaigns are likely insufficient in this high-turnover urban dog population. Effective One Health zoonotic control strategies must transition from static abundance-based targets to dynamic, species-specific and turnover-adjusted intervention schedules.

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Teaching adipose tissue as an organ system: addressing weight bias and enhancing anatomical understanding through AdipoAtlas

Hermsmeyer, I. D. K.; Sonneville, K. R.; Patterson, A. M. S.; Sherwood, R. M.; Orlikoff, E. R.; MacDougald, O. A.; Orczykowski, M. E.

2026-07-30 scientific communication and education 10.64898/2026.07.29.741583 medRxiv
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Adipose tissue (body fat) is increasingly recognized as a dynamic organ system essential to human health, with distinct depots that serve specialized biological functions. However, this understanding is not reflected in traditional human anatomy curricula, where adipose tissue is typically introduced only as connective tissue and treated in dissection as an obstacle to be removed rather than a structure worthy of study. Anatomy dissection courses have been identified as a source of negative weight bias in medical students, with students reporting disgust toward adipose tissue and frustration with its removal to visualize course-required anatomical structures. Here, we hypothesize that reframing adipose tissue as a functional organ system within anatomy curricula may improve students understanding of human anatomy and mitigate these negative perceptions. To test this, we created a human adipose atlas (AdipoAtlas) by identifying and photographing macroscopic adipose depots in an anatomical donor and organizing these images into an anatomical reference with evidence-based functional descriptions. The atlas was integrated into a human anatomy dissection course, followed by a survey assessing students perceptions of adipose tissue and attitudes related to weight bias, with a concurrent non-dissection anatomy course serving as a control. Students in the adipose-inclusive course reported more positive perceptions and improved understanding of adipose tissue as a multifunctional organ system, while responses related to weight-based discrimination and broader attitudes toward body size were similar between groups. These results support our hypothesis that integrating adipose tissue into anatomy education improves anatomical understanding and may reduce negative weight-related perceptions.

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YGEP: An Integrated Web Platform for Genomic Evaluation and Intelligent Breeding in Yak

Yu, Y.; Li, Z.; Shan, X.; Fu, Y.; Fu, Y.; Zhang, Z.; Guo, X.; Wang, S.; Zhao, J.; Zhong, J.; Suo, L.; Lan, D.; Wang, J.

2026-10-06 bioinformatics 10.64898/2026.09.29.755494 medRxiv
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Background: The yak (Bos grunniens) is an essential livestock species in high-altitude alpine ecosystems, serving key roles in meat, milk, and wool production as well as ecological maintenance. However, traditional yak breeding systems face several limitations, including fragmented herd data management, inefficient phenotypic collection, missing pedigree records, and high technical barriers to applying genomic technologies. These factors constrain the widespread application of modern genetic evaluation methods in yak breeding programs. Description: We developed the Yak Genomic Evaluation Platform (YGEP, https://yakbreeding.swun.edu.cn/en/), an integrated digital system for yak genetic selection and herd management. YGEP integrates three core analytical modules: pedigree reconstruction, genotype imputation and genomic breeding value estimation. Benchmarking on 706 yaks showed that GBLUP achieved a prediction accuracy of r = 0.96 for cannon bone circumference (CCB), and KBeagle reached 84.0% imputation accuracy with the combined reference panel. Conclusion: YGEP bridges the gap between advanced genomic analytics and practical yak breeding. By integrating pedigree reconstruction, genotype imputation, and GEBV estimation into a user-friendly cloud platform, YGEP effectively eliminates technical and data bottlenecks. Overall, it provides an accessible, scalable, and standardized solution to advance digital herd management and precision genetic improvement in alpine livestock.